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Settings are used to configure the pathway prediction, and include a list of package/s and a truncation strategy:
- Packages: all available rules within the selected packages are used for pathway prediction.
- Truncation strategy limits the combinatorial explosion in pathway prediction. A truncation strategy can include:
- A relative reasoning model and a probability threshold.
- Basic truncators like e.g. RuleLikelihood, or Maximum Number of Nodes.
The available settings are listed here: https://envipath.org/setting