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Settings are used to configure the pathway prediction, and include a list of package/s and a truncation strategy:

  • Packages: all available rules within the selected packages are used for pathway prediction.
  • Truncation strategy limits the combinatorial explosion in pathway prediction. A truncation strategy can include:
    1. A relative reasoning model and a probability threshold.
    2. Basic truncators like e.g. RuleLikelihood, or Maximum Number of Nodes.

Available Settings

The available settings are listed here:

settings.txt · Last modified: 2023/12/12 13:04 by shankar