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| packages [2024/05/08 08:35] – [Eawag-SLUDGE] strich | packages [2024/05/08 08:40] (current) – [Eawag-SLUDGE] strich |
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| ===== Eawag-SLUDGE ===== | ===== Eawag-SLUDGE ===== |
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| The [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038|EAWAG-SLUDGE]] package contains biotransformation data extracted from scientific publications for microbially mediated processes in biological wastewater treatment. There are 184 [[pathways|pathways]] included in this package, with 1070 [[compounds|compounds]] and 521 [[reacctions|reactions]]. | The [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038|EAWAG-SLUDGE]] package contains biotransformation data extracted from scientific publications for microbially mediated processes in biological wastewater treatment. There are 184 [[pathways|pathways]] included in this package, with 1070 [[compounds|compounds]] and 521 [[reactions|reactions]]. The biotransformation reaction schemes are stored as [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/pathway|pathways]]. The experimental conditions and additional information (e. g. sludge source) are provided in [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenarios]]. Any observed transformation products ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/compound|compounds]]) are linked to their corresponding experimental metadata ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenario]]). Kinetic parameters (rate constants and/or half-lives) including corresponding scenarios are provided for compounds for which such data is available. There are currently 172 compounds with reported rate constants and/or half-lives within this package. |
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| The biotransformation reaction schemes are stored as [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/pathway|pathways]]. The experimental conditions and additional information (e. g. sludge source) are collected in the [[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenario]] objects. Any observed transformation products ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/compound|compounds]]) are linked to their corresponding experimental metadata ([[https://envipath.org/package/4a3cd0f4-4d2b-4f00-b3e6-a29e721f7038/scenario|scenario]]). Kinetic parameters (rate constants and/or half-lives) including corresponding scenarios are indicated for compounds for which such data is available. There are currently 172 compounds with reported rate constants and/or half-lives within this package. | |
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| | ==== Navigation ==== |
| ===== Navigation ===== | |
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| Objects from all packages are shown when the user selects the corresponding category in the main menu (if the user has [[permissions|Permission]].READ). To view the content of a specific package you can choose it on the [[https://envipath.org/package|package]] page. Once you entered it, you have access to the objects contained within this package by clicking on the corresponding object (e.g., Compound, Rule, ...). To create and add new objects to this package enter the desired category, click the "Actions"-button and select e.g. "New Compound". Keep in mind that you can only edit existing entities or add new ones to a package if you have [[permissions|Permission]].WRITE. | Objects from all packages are shown when the user selects the corresponding category in the main menu (if the user has [[permissions|Permission]].READ). To view the content of a specific package you can choose it on the [[https://envipath.org/package|package]] page. Once you entered it, you have access to the objects contained within this package by clicking on the corresponding object (e.g., Compound, Rule, ...). To create and add new objects to this package enter the desired category, click the "Actions"-button and select e.g. "New Compound". Keep in mind that you can only edit existing entities or add new ones to a package if you have [[permissions|Permission]].WRITE. |
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| =====Default Package ===== | ===Default Package === |
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