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start [2024/09/17 08:51] – shankarstart [2025/11/12 12:07] (current) – strich
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     * [[https://academic.oup.com/nar/article/38/suppl_1/D488/3112190|Link to Gao et al 2009 @80,100,350,205|target=_tab]]     * [[https://academic.oup.com/nar/article/38/suppl_1/D488/3112190|Link to Gao et al 2009 @80,100,350,205|target=_tab]]
     * [[https://academic.oup.com/nar/article/44/D1/D502/2502710?login=true|Wicker et al 2016 @370,100,660,200|target=_tab]]     * [[https://academic.oup.com/nar/article/44/D1/D502/2502710?login=true|Wicker et al 2016 @370,100,660,200|target=_tab]]
-    +    * [[https://pubs.rsc.org/en/content/articlelanding/2017/em/c6em00697c|Latino et al 2017 @500,325,765,444|target=_tab]]
 {{<map}} {{<map}}
  
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   * [[Packages]]   * [[Packages]]
   * [[Pathway Prediction]]   * [[Pathway Prediction]]
 +  * [[Pathway Prediction in Batch Mode]]
 +  * [[PFAS Resources]]
   * [[Relative Reasoning]]   * [[Relative Reasoning]]
   * [[Settings]]   * [[Settings]]
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   * [[License]]   * [[License]]
   * [[Review]]   * [[Review]]
 +
  
    
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   * [[Compound]]   * [[Compound]]
-  *[[ Reaction]]+  * [[Reaction]]
   * [[Rule]]   * [[Rule]]
   * [[Pathway]]   * [[Pathway]]
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   * [[Search]]   * [[Search]]
  
-==== Data Upload ==== 
  
-We are working to upload biotransformation pathways in a quick and efficient manner using an excel workbook. If you want to add your data to a future reviewed package, please fill out this template {{ :envipath_upload_template_august2024.xlsx |}} and upload your completed version to our [[https://www.dropbox.com/scl/fo/9hs9cjf27ezu690yg15vt/AFwci9ls8xoGEWnv5wlMf38?rlkey=vfjvw3wga4qtap53m7sijad8e&st=trhvvtrc&dl=0|Dropbox folder]]. Note- when you upload your filled-out version, you will need to rename it to something unique (i.e. lastname_firstname_yymmdd_compoundname.xlsx)+ 
 + 
 +==== Associated Resources ==== 
 + 
 +[[https://github.com/MSM-group/ContaHMM?tab=readme-ov-file#contahmm-a-resource-for-the-search-of-biotransformation-related-bacterial-genes|ContaHMM: A Resource for the search of Biotransformation-Related Bacterial Genes]] 
 + 
 +We present a dataset and HMMs (Hidden Markov Models) for biotransformation-related bacterial genes, compiled from existing databases and enhanced by extensive metadata collection, manual curation, and HMM generation.This collection aims to facilitate the annotation of biotransformation-related enzymes and expand the known examples in the field. 
 + 
 + 
  
  
start.1726563088.txt.gz · Last modified: 2024/09/17 08:51 by shankar