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references_to_external_databases [2024/09/02 11:49] – shankarreferences_to_external_databases [2024/09/02 12:28] (current) – shankar
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   - For each substrate and product, check if the references were updated at any point. If not, update their references.   - For each substrate and product, check if the references were updated at any point. If not, update their references.
   - Check if all substrates and products have a ChEBI identifier. If so, use it to query Rhea identifiers available using the [[https://www.rhea-db.org/help/rest-api|Rhea REST API]]   - Check if all substrates and products have a ChEBI identifier. If so, use it to query Rhea identifiers available using the [[https://www.rhea-db.org/help/rest-api|Rhea REST API]]
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 +1. We find matches by performing a request to [[https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest#section=URL-based-API|PubChem’s REST API]] using the compound domain. When using InChiKey we use “inchikey” as namespace and for SMILES we use “smiles” as namespace.
  
  
  
  
references_to_external_databases.1725277776.txt.gz · Last modified: 2024/09/02 11:49 by shankar